Panagiotis I. Koukos

Biomedical Research Foundation of the Academy of Athens GR

0000-0001-6705-2815

Publications

2,941

Citations

H-Index

i10-Index

100.67

2yr Mean Cite

Cite/Paper

Data combined from OpenAlex . OA = OpenAlex S2 = Semantic Scholar

Verify on Google Scholar

Publication & Citation Trends

Most Cited Works

Structural Biology in the Clouds: The WeNMR-EOSC Ecosystem OA

Rodrigo V. Honorato, Panagiotis I. Koukos, Brian Jiménez‐García, A. Tsaregorodtsev, M. Verlato +3 more

Florence Research (University of Florence) 2021

824

The HADDOCK2.4 web server for integrative modeling of biomolecular complexes OA

Rodrigo V. Honorato, Mikaël Trellet, Brian Jiménez‐García, Jörg Schaarschmidt, Marco Giulini +10 more

Nature Protocols 2024

596

Large-scale prediction of binding affinity in protein–small ligand complexes: the PRODIGY-LIG web server OA

Anna Vangone, Jörg Schaarschmidt, Panagiotis I. Koukos, Cunliang Geng, Nevia Citro +3 more

Bioinformatics 2018

273

Performance of HADDOCK and a simple contact-based protein–ligand binding affinity predictor in the D3R Grand Challenge 2 OA

Zeynep Kurkcuoglu, Panagiotis I. Koukos, Nevia Citro, Mikaël Trellet, João Rodrigues +8 more

Journal of Computer-Aided Molecular Design 2017

144

Blind prediction of homo‐ and hetero‐protein complexes: The CASP13‐CAPRI experiment OA

Marc F. Lensink, Guillaume Brysbaert, Nurul Nadzirin, Sameer Velankar, Raphaël A. G. Chaleil +95 more

Proteins Structure Function and Bioinformatics 2019

140

Publications

56 total

The HADDOCK2.4 web server for integrative modeling of biomolecular complexes PDF

Rodrigo V. Honorato, Mikaël Trellet, Brian Jiménez‐García, Jörg Schaarschmidt, Marco Giulini et al. - Nature Protocols, 2024

Cited by 596 OpenAlex

Pathogen-sugar interactions revealed by universal saturation transfer analysis PDF

Charles Buchanan, Ben Gaunt, Peter J. Harrison, Yun Yang, Jiwei Liu et al. - Science, 2022

Cited by 58 OpenAlex

Structural Biology in the Clouds: The WeNMR-EOSC Ecosystem PDF

Rodrigo V. Honorato, Panagiotis I. Koukos, Brian Jiménez‐García, A. Tsaregorodtsev, M. Verlato et al. - Florence Research (University of Florence), 2021

Cited by 824 OpenAlex

Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment PDF

Marc F. Lensink, Guillaume Brysbaert, Théo Mauri, Nurul Nadzirin, Sameer Velankar et al. - Proteins Structure Function and Bioinformatics, 2021

Cited by 127 OpenAlex

Structural Biology in the Clouds: The WeNMR-EOSC Ecosystem PDF

Rodrigo V. Honorato, Panagiotis I. Koukos, Brian Jiménez‐García, A. Tsaregorodtsev, M. Verlato et al. - Frontiers in Molecular Biosciences, 2021

Cited by 37 OpenAlex

Blind prediction of homo‐ and hetero‐protein complexes: The CASP13‐CAPRI experiment PDF

Marc F. Lensink, Guillaume Brysbaert, Nurul Nadzirin, Sameer Velankar, Raphaël A. G. Chaleil et al. - Proteins Structure Function and Bioinformatics, 2019

Cited by 140 OpenAlex

Integrative Modelling of Biomolecular Complexes PDF

Panagiotis I. Koukos, Alexandre M. J. J. Bonvin - Journal of Molecular Biology, 2019

Cited by 102 OpenAlex

PRODIGY-crystal: a web-tool for classification of biological interfaces in protein complexes PDF

Brian Jiménez‐García, Katarina Elez, Panagiotis I. Koukos, Alexandre M. J. J. Bonvin, Anna Vangone - Bioinformatics, 2019

Cited by 55 OpenAlex

Large-scale prediction of binding affinity in protein–small ligand complexes: the PRODIGY-LIG web server PDF

Anna Vangone, Jörg Schaarschmidt, Panagiotis I. Koukos, Cunliang Geng, Nevia Citro et al. - Bioinformatics, 2018

Cited by 273 OpenAlex

Protein–ligand pose and affinity prediction: Lessons from D3R Grand Challenge 3 PDF

Panagiotis I. Koukos, Li C. Xue, Alexandre M. J. J. Bonvin - Journal of Computer-Aided Molecular Design, 2018

Cited by 40 OpenAlex

Research Topics

Protein Structure and Dynamics (26) Computational Drug Discovery Methods (12) Enzyme Structure and Function (11) RNA and protein synthesis mechanisms (10) Machine Learning in Bioinformatics (6)