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Fabian J. Theis

Helmholtz Zentrum München DE

ORCID iD 0000-0002-2419-1943
1,090
Publications
82,803
Citations
126
H-Index
527
i10-Index
16.36
2yr Mean Cite
-
Cite/Paper
Data combined from OpenAlex . OA = OpenAlex S2 = Semantic Scholar
Verify on Google Scholar

Publication & Citation Trends

Most Cited Works

SCANPY: large-scale single-cell gene expression data analysis OA
F. Alexander Wolf, Philipp Angerer, Fabian J. Theis
Genome biology 2018
8,970
Generalizing RNA velocity to transient cell states through dynamical modeling
Volker Bergen, Marius Lange, Stefan Peidli, F. Alexander Wolf, Fabian J. Theis
Nature Biotechnology 2020
2,999
SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues OA
Carly G.K. Ziegler, Samuel J. Allon, Sarah K. Nyquist, Ian Mbano, Vincent N. Miao +95 more
Cell 2020
2,480
Current best practices in single‐cell RNA‐seq analysis: a tutorial OA
Malte D. Luecken, Fabian J. Theis
Molecular Systems Biology 2019
2,272
PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells OA
F. Alexander Wolf, Fiona Hamey, Mireya Plass, Jordi Solana, Joakim S. Dahlin +4 more
Genome biology 2019
1,764

Publications

1,074 total

Best practices for single-cell analysis across modalities PDF

Lukas Heumos, Anna C. Schaar, Christopher Lance, Anastasia Litinetskaya, Felix Drost et al. - Nature Reviews Genetics, 2023
Cited by 1,002 OpenAlex

Squidpy: a scalable framework for spatial omics analysis PDF

Giovanni Palla, Hannah Spitzer, Michal Klein, David S. Fischer, Anna C. Schaar et al. - Nature Methods, 2022
Cited by 1,017 OpenAlex

Benchmarking atlas-level data integration in single-cell genomics PDF

Malte D. Luecken, Maren Büttner, Kridsadakorn Chaichoompu, Anna Danese, Marta Interlandi et al. - Nature Methods, 2021
Cited by 1,345 OpenAlex

Generalizing RNA velocity to transient cell states through dynamical modeling

Volker Bergen, Marius Lange, Stefan Peidli, F. Alexander Wolf, Fabian J. Theis - Nature Biotechnology, 2020
Cited by 2,999 OpenAlex

SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues PDF

Carly G.K. Ziegler, Samuel J. Allon, Sarah K. Nyquist, Ian Mbano, Vincent N. Miao et al. - Cell, 2020
Cited by 2,480 OpenAlex

Eleven grand challenges in single-cell data science PDF

David Lähnemann, Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks et al. - Genome biology, 2020
Cited by 1,387 OpenAlex

Current best practices in single‐cell RNA‐seq analysis: a tutorial PDF

Malte D. Luecken, Fabian J. Theis - Molecular Systems Biology, 2019
Cited by 2,272 OpenAlex

PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells PDF

F. Alexander Wolf, Fiona Hamey, Mireya Plass, Jordi Solana, Joakim S. Dahlin et al. - Genome biology, 2019
Cited by 1,764 OpenAlex

Deep learning: new computational modelling techniques for genomics

Gökçen Eraslan, Žiga Avsec, Julien Gagneur, Fabian J. Theis - Nature Reviews Genetics, 2019
Cited by 1,187 OpenAlex

Single-cell RNA-seq denoising using a deep count autoencoder PDF

Gökçen Eraslan, Lukas M. Simon, Maria Mircea, Nikola S. Mueller, Fabian J. Theis - Nature Communications, 2019
Cited by 1,133 OpenAlex

Research Topics

Single-cell and spatial transcriptomics (320) Cell Image Analysis Techniques (141) Blind Source Separation Techniques (138) Gene Regulatory Network Analysis (137) Gene expression and cancer classification (79)

Frequent Co-Authors

F.
F. Alexander Wolf
4 joint publications
LU
Lukas M. Simon
3 joint publications
MA
Maren Büttner
3 joint publications
ME
Meshal Ansari
2 joint publications
IL
Ilias Angelidis
2 joint publications
JO
Jonathan A. Kropski
2 joint publications

Affiliations

Florida State University
US 2005 - 2004
Broad Institute
US 2024 - 2024
Goethe University Frankfurt
DE 1998 - 1992
Institute of Applied Physics
UA 2018 - 2018
University of Vienna
AT 2020 - 2020

External Profiles

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