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Julio Collado‐Vides

Boston University US

ORCID iD 0000-0001-8780-7664
192
Publications
21,776
Citations
51
H-Index
99
i10-Index
3.0
2yr Mean Cite
-
Cite/Paper
Data combined from OpenAlex . OA = OpenAlex S2 = Semantic Scholar
Verify on Google Scholar

Publication & Citation Trends

Most Cited Works

The Complete Genome Sequence of <i>Escherichia coli</i> K-12
Frederick R. Blattner, Guy Plunkett, Craig A. Bloch, Nicole T. Perna, Valerie Burland +12 more
Science 1997
7,494
The BioPAX community standard for pathway data sharing OA
Emek Demir, Michael P. Cary, Suzanne Paley, Ken Fukuda, Christian Lemer +85 more
Nature Biotechnology 2010
755
Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies 1 1Edited by G. von Heijne
Jacques van Helden, Bruno André, Julio Collado‐Vides
Journal of Molecular Biology 1998
749
Minimum information requested in the annotation of biochemical models (MIRIAM) OA
Nicolas Le Novère, Andrew Finney, Michael Hucka, Upinder S. Bhalla, Fabien Campagne +11 more
Nature Biotechnology 2005
628
The EcoCyc database: reflecting new knowledge about<i>Escherichia coli</i>K-12 OA
Ingrid M. Keseler, Amanda Mackie, Alberto Santos-Zavaleta, Richard Billington, César Bonavides-Martínez +16 more
Nucleic Acids Research 2016
578

Publications

192 total

RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in<i>E. coli</i>K-12 PDF

Alberto Santos-Zavaleta, Heladia Salgado, Socorro Gama‐Castro, Mishael Sánchez-Pérez, Laura Gómez-Romero et al. - Nucleic Acids Research, 2018
Cited by 415 OpenAlex

The EcoCyc database: reflecting new knowledge about<i>Escherichia coli</i>K-12 PDF

Ingrid M. Keseler, Amanda Mackie, Alberto Santos-Zavaleta, Richard Billington, César Bonavides-Martínez et al. - Nucleic Acids Research, 2016
Cited by 578 OpenAlex

RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond PDF

Socorro Gama‐Castro, Heladia Salgado, Alberto Santos-Zavaleta, Daniela Ledezma-Tejeida, Luis Muñiz-Rascado et al. - Nucleic Acids Research, 2015
Cited by 544 OpenAlex

EcoCyc: fusing model organism databases with systems biology PDF

Ingrid M. Keseler, Amanda Mackie, Martín Peralta-Gil, Alberto Santos-Zavaleta, Socorro Gama‐Castro et al. - Nucleic Acids Research, 2012
Cited by 564 OpenAlex

RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more PDF

Heladia Salgado, Martín Peralta-Gil, Socorro Gama‐Castro, Alberto Santos-Zavaleta, Luis Muñiz-Rascado et al. - Nucleic Acids Research, 2012
Cited by 449 OpenAlex

The BioPAX community standard for pathway data sharing PDF

Emek Demir, Michael P. Cary, Suzanne Paley, Ken Fukuda, Christian Lemer et al. - Nature Biotechnology, 2010
Cited by 755 OpenAlex

EcoCyc: a comprehensive database of Escherichia coli biology PDF

Ingrid M. Keseler, Julio Collado‐Vides, Alberto Santos-Zavaleta, Martín Peralta-Gil, Socorro Gama‐Castro et al. - Nucleic Acids Research, 2010
Cited by 506 OpenAlex

RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation PDF

Socorro Gama‐Castro, Verónica Jiménez‐Jacinto, Martín Peralta-Gil, Alberto Santos-Zavaleta, M. I. Penaloza-Spinola et al. - Nucleic Acids Research, 2007
Cited by 518 OpenAlex

Minimum information requested in the annotation of biochemical models (MIRIAM) PDF

Nicolas Le Novère, Andrew Finney, Michael Hucka, Upinder S. Bhalla, Fabien Campagne et al. - Nature Biotechnology, 2005
Cited by 628 OpenAlex

Identifying global regulators in transcriptional regulatory networks in bacteria PDF

Agustino Martínez‐Antonio, Julio Collado‐Vides - Current Opinion in Microbiology, 2003
Cited by 551 OpenAlex

Research Topics

Bacterial Genetics and Biotechnology (75) RNA and protein synthesis mechanisms (62) Gene Regulatory Network Analysis (51) Genomics and Phylogenetic Studies (46) Microbial Metabolic Engineering and Bioproduction (41)

Frequent Co-Authors

AL
Alberto Santos-Zavaleta
7 joint publications
CÉ
César Bonavides-Martínez
7 joint publications
SO
Socorro Gama‐Castro
7 joint publications
LU
Luis Muñiz-Rascado
7 joint publications
MA
Martín Peralta-Gil
5 joint publications
HE
Heladia Salgado
5 joint publications

Affiliations

Boston University
US 2026 - 2018
SRI International
US 2008 - 2008
J. Craig Venter Institute
US 2008 - 2008
European Bioinformatics Institute
GB 2010 - 2010
Université Libre de Bruxelles
BE 2010 - 2010

External Profiles

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