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Rick Farouni

ETH Zurich CH

ORCID iD 0000-0002-3454-2946
30
Publications
2,359
Citations
12
H-Index
12
i10-Index
25.0
2yr Mean Cite
-
Cite/Paper
Data combined from OpenAlex + Semantic Scholar. OA = OpenAlex S2 = Semantic Scholar
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Publication & Citation Trends

Publications

30 total

Transcriptional linkage analysis with in vivo AAV-Perturb-seq PDF

António J. Santinha, Esther Klingler, Maria Kuhn, Rick Farouni, Sandra Lagler et al. - Nature, 2023
Cited by 76 OpenAlex

Transcriptional reprogramming of skeletal muscle stem cells by the niche environment PDF

Felicia Lazure, Rick Farouni, Korin Sahinyan, Darren M. Blackburn, Aldo Hernández-Corchado et al. - Nature Communications, 2023
Cited by 40 OpenAlex

Noninvasive assessment of gut function using transcriptional recording sentinel cells PDF

Florian Schmidt, Jakob Zimmermann, Tanmay Tanna, Rick Farouni, Tyrrell Conway et al. - Science, 2022
Cited by 89 OpenAlex

Model-based analysis of sample index hopping reveals its widespread artifacts in multiplexed single-cell RNA-sequencing PDF

Rick Farouni, Haig Djambazian, Lorenzo Ferri, Jiannis Ragoussis, Hamed S. Najafabadi - Nature Communications, 2020
Cited by 62 OpenAlex

CRISPResso2 provides accurate and rapid genome editing sequence analysis

Kendell Clement, Holly A. Rees, Matthew C. Canver, Jason M. Gehrke, Rick Farouni et al. - Nature Biotechnology, 2019
Cited by 1,770 OpenAlex

TAF5L and TAF6L Maintain Self-Renewal of Embryonic Stem Cells via the MYC Regulatory Network PDF

Davide Seruggia, Martin Oti, Pratibha Tripathi, Matthew C. Canver, Lucy LeBlanc et al. - Molecular Cell, 2019
Cited by 53 OpenAlex

AmpUMI: design and analysis of unique molecular identifiers for deep amplicon sequencing PDF

Kendell Clement, Rick Farouni, Daniel E. Bauer, Luca Pinello - Bioinformatics, 2018
Cited by 56 OpenAlex

CRISPR-SURF: discovering regulatory elements by deconvolution of CRISPR tiling screen data PDF

Jonathan Y. Hsu, Charles P. Fulco, Mitchel A. Cole, Matthew C. Canver, Danilo Pellin et al. - Nature Methods, 2018
Cited by 51 OpenAlex

Bioconda: A sustainable and comprehensive software distribution for the life sciences PDF

Björn Grüning, Ryan Dale, Andreas Sjödin, Brad Chapman, Jillian Rowe et al. - bioRxiv (Cold Spring Harbor Laboratory), 2017
Cited by 53 OpenAlex

ALTRE: workflow for defining ALTered Regulatory Elements using chromatin accessibility data OA

Elizabeth Baskin, Rick Farouni, E. Mathé - bioRxiv, 2016
Cited by 5 Semantic Scholar

Research Topics

Single-cell and spatial transcriptomics (10) CRISPR and Genetic Engineering (9) Cancer Genomics and Diagnostics (6) Genomics and Chromatin Dynamics (5) RNA and protein synthesis mechanisms (5)

Affiliations

Broad Institute
US 2019 - 2018
Harvard University
US 2019 - 2017
ETH Zurich
CH 2024 - 2022
Massachusetts General Hospital
US 2019 - 2017
Centre For Human Genetics
IN 2021 - 2019

External Profiles

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