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Paolo Di Tommaso

Azienda Ospedaliera S.Maria IT

ORCID iD 0000-0003-3220-0253
65
Publications
6,450
Citations
18
H-Index
25
i10-Index
9.5
2yr Mean Cite
-
Cite/Paper
Data combined from OpenAlex + Semantic Scholar. OA = OpenAlex S2 = Semantic Scholar
Verify on Google Scholar

Publication & Citation Trends

Most Cited Works

The nf-core framework for community-curated bioinformatics pipelines OA
Philip Ewels, Alexander Peltzer, Sven Fillinger, Harshil Patel, Johannes Alneberg +4 more
Nature Biotechnology 2020
3,782
T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension OA
Paolo Di Tommaso, Sébastien Moretti, Ioannis Xénarios, Miquel Orobitg, A. Montanyola +3 more
Nucleic Acids Research 2011
1,225
TCS: A New Multiple Sequence Alignment Reliability Measure to Estimate Alignment Accuracy and Improve Phylogenetic Tree Reconstruction OA
Jia‐Ming Chang, Paolo Di Tommaso, Cédric Notredame
Molecular Biology and Evolution 2014
224
Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee OA
Jia‐Ming Chang, Paolo Di Tommaso, Jean-François Taly, Cédric Notredame
BMC Bioinformatics 2012
181
AMPA: an automated web server for prediction of protein antimicrobial regions OA
Marc Torrent, Paolo Di Tommaso, David Pulido, M. Victòria Nogués, Cédric Notredame +2 more
Bioinformatics 2011
169

Publications

65 total

The Front-End Electronics for the Hyper-Kamiokande Far Detector

M. I. A. Di Nola, Hyper-Kamiokande Collaboration, Laamara Rachid, Aihara Hiroaki, Aivazelis Konstantinos - IEEE Transactions on Nuclear Science, 2025
Cited by 0 Semantic Scholar

Divertor Tokamak Test facility project: status of design and implementation OA

D. Angeli, M. D. Leo, V. Luca, R. Marchi, E. Marzi - Nuclear Fusion, 2024
Cited by 59 Semantic Scholar

Workflows Community Summit: Bringing the Scientific Workflows Community Together PDF

Rafael Ferreira da Silva, Henri Casanova, Kyle Chard, Dan Laney, Dong H. Ahn et al. - arXiv (Cornell University), 2021
Cited by 27 OpenAlex

The nf-core framework for community-curated bioinformatics pipelines OA

Philip Ewels, Alexander Peltzer, Sven Fillinger, Harshil Patel, Johannes Alneberg et al. - Nature Biotechnology, 2020
Cited by 3,782 OpenAlex

<i>nf-core</i> : Community curated bioinformatics pipelines PDF

Philip Ewels, Alexander Peltzer, Sven Fillinger, Johannes Alneberg, Harshil Patel et al. - bioRxiv (Cold Spring Harbor Laboratory), 2019
Cited by 63 OpenAlex

Scalable Workflows and Reproducible Data Analysis for Genomics PDF

Francesco Strozzi, Roel Janssen, Ricardo Wurmus, Michael R. Crusoe, George Githinji et al. - Methods in molecular biology, 2019
Cited by 36 OpenAlex

Large multiple sequence alignments with a root-to-leaf regressive method PDF

Edgar Garriga Nogales, Paolo Di Tommaso, Cedrik Magis, Ionas Erb, Leila Mansouri et al. - Nature Biotechnology, 2019
Cited by 36 OpenAlex

PSI/TM-Coffee: a web server for fast and accurate multiple sequence alignments of regular and transmembrane proteins using homology extension on reduced databases PDF

Evan Floden, Paolo Di Tommaso, Maria Chatzou, Cedrik Magis, Cédric Notredame et al. - Nucleic Acids Research, 2016
Cited by 68 OpenAlex

The impact of Docker containers on the performance of genomic pipelines PDF

Paolo Di Tommaso, Emilio Palumbo, Maria Chatzou, Pablo Prieto, Michael Heuer et al. - PeerJ, 2015
Cited by 150 OpenAlex

TCS: a web server for multiple sequence alignment evaluation and phylogenetic reconstruction: Figure 1. PDF

Jia‐Ming Chang, Paolo Di Tommaso, Vincent Lefort, Olivier Gascuel, Cédric Notredame - Nucleic Acids Research, 2015
Cited by 62 OpenAlex

Research Topics

Genomics and Phylogenetic Studies (26) Scientific Computing and Data Management (23) Gene expression and cancer classification (12) Research Data Management Practices (12) RNA and protein synthesis mechanisms (7)

Frequent Co-Authors

CÉ
Cédric Notredame
11 joint publications
JI
Jia‐Ming Chang
7 joint publications
JE
Jean-François Taly
4 joint publications
CE
Cedrik Magis
4 joint publications
IO
Ionas Erb
3 joint publications
PH
Philip Ewels
2 joint publications

Affiliations

Universitat Autònoma de Barcelona
ES 2011 - 2011
Universitat de Lleida
ES 2010 - 2010
Universitat Pompeu Fabra
ES 2020 - 2010
Barcelona Biomedical Research Park
ES 2011 - 2011
Institut thématique Génétique, génomique et bioinformatique
FR 2015 - 2015

External Profiles

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