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AA

Alexis Allot

Montreal Neurological Institute and Hospital CA

0000-0002-2706-9054

51

Publications

2,389

Citations

18

H-Index

20

i10-Index

11.71

2yr Mean Cite

-

Cite/Paper

Data combined from OpenAlex . OA = OpenAlex S2 = Semantic Scholar

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Publication & Citation Trends

Most Cited Works

Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species OA

Paul Kersey, James E. Allen, Alexis Allot, Matthieu Barba, Sanjay Boddu +41 more

Nucleic Acids Research 2017

484

PubTator central: automated concept annotation for biomedical full text articles OA

Chih-Hsuan Wei, Alexis Allot, Robert Leaman, Zhiyong Lu

Nucleic Acids Research 2019

428

Keep up with the latest coronavirus research OA

Qingyu Chen, Alexis Allot, Zhiyong Lu

Nature 2020

324

LitCovid: an open database of COVID-19 literature OA

Qingyu Chen, Alexis Allot, Zhiyong Lu

Nucleic Acids Research 2020

275

LitVar: a semantic search engine for linking genomic variant data in PubMed and PMC OA

Alexis Allot, Yifan Peng, Chih-Hsuan Wei, Kyubum Lee, Lon Phan +1 more

Nucleic Acids Research 2018

144

Publications

51 total

PubTator 3.0: an AI-powered literature resource for unlocking biomedical knowledge PDF

Chih-Hsuan Wei, Alexis Allot, Po‐Ting Lai, Robert Leaman, Shubo Tian et al. - Nucleic Acids Research, 2024

Cited by 134 OpenAlex

Tracking genetic variants in the biomedical literature using LitVar 2.0 PDF

Alexis Allot, Chih-Hsuan Wei, Lon Phan, Timothy Hefferon, Melissa Landrum et al. - Nature Genetics, 2023

Cited by 37 OpenAlex

Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations PDF

Qingyu Chen, Alexis Allot, Robert Leaman, Rezarta Islamaj, Jingcheng Du et al. - Database, 2022

Cited by 40 OpenAlex

LitMC-BERT: Transformer-Based Multi-Label Classification of Biomedical Literature With An Application on COVID-19 Literature Curation PDF

Qingyu Chen, Jingcheng Du, Alexis Allot, Zhiyong Lu - IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2022

Cited by 39 OpenAlex

LitCovid in 2022: an information resource for the COVID-19 literature PDF

Qingyu Chen, Alexis Allot, Robert Leaman, Chih-Hsuan Wei, Elaheh Aghaarabi et al. - Nucleic Acids Research, 2022

Cited by 30 OpenAlex

LitSuggest: a web-based system for literature recommendation and curation using machine learning PDF

Alexis Allot, Kyubum Lee, Qingyu Chen, Ling Luo, Zhiyong Lu - Nucleic Acids Research, 2021

Cited by 63 OpenAlex

Keep up with the latest coronavirus research PDF

Qingyu Chen, Alexis Allot, Zhiyong Lu - Nature, 2020

Cited by 324 OpenAlex

LitCovid: an open database of COVID-19 literature PDF

Qingyu Chen, Alexis Allot, Zhiyong Lu - Nucleic Acids Research, 2020

Cited by 275 OpenAlex

Predicting risk of late age-related macular degeneration using deep learning PDF

Yifan Peng, Tiarnán D L Keenan, Qingyu Chen, Elvira Agrón, Alexis Allot et al. - npj Digital Medicine, 2020

Cited by 66 OpenAlex

Multimodal, multitask, multiattention (M3) deep learning detection of reticular pseudodrusen: Toward automated and accessible classification of age-related macular degeneration PDF

Qingyu Chen, Tiarnán D L Keenan, Alexis Allot, Yifan Peng, Elvira Agrón et al. - Journal of the American Medical Informatics Association, 2020

Cited by 39 OpenAlex

Research Topics

Biomedical Text Mining and Ontologies (20) Topic Modeling (9) Bioinformatics and Genomic Networks (6) Genomics and Phylogenetic Studies (5) Neuroinflammation and Neurodegeneration Mechanisms (5)

Frequent Co-Authors

QI

Qingyu Chen

10 joint publications

ZH

Zhiyong Lu

10 joint publications

CH

Chih-Hsuan Wei

5 joint publications

RO

Robert Leaman

4 joint publications

ZH

Zhiyong Lu

3 joint publications

YI

Yifan Peng

3 joint publications

Affiliations

Montreal Neurological Institute and Hospital

CA 2026 - 2024

Centre National de la Recherche Scientifique

FR 2017 - 2013

National Institutes of Health

US 2025 - 2018

European Bioinformatics Institute

GB 2017 - 2017

Inserm

FR 2013 - 2013

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